Creates a tibble of a selected number of top productive sequences from the study table.
Arguments
- productive_table
A tibble of productive sequences generated by the LymphoSeq2 function
productiveSeq(). "duplicate_frequency" and "junction_aa" are a required columns.- top
The number of top productive sequences in each data frame to subset by their frequencies.
Examples
file_path <- system.file("extdata", "TCRB_sequencing", package = "LymphoSeq2")
study_table <- LymphoSeq2::readImmunoSeq(path = file_path, threads = 1)
amino_table <- LymphoSeq2::productiveSeq(study_table = study_table, aggregate = "junction_aa")
top_seqs <- LymphoSeq2::topSeqs(productive_table = amino_table, top = 1)