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Sample repertoire

Usage

sampledSummary(study_table, min_count)

Arguments

study_table

A tibble consisting of antigen receptor sequencing imported by the LymphoSeq2 function readImmunoSeq(). "junction_aa", "duplicate_count", and "duplicate_frequency" are required columns. Note that clonality is usually calculated from productive junction sequences. Therefore, it is not recommended to run this function using a productive sequence list aggregated by amino acids.

min_count

The minimum depth to which each repertoire in the study must be sampled to. Default 1000 (the default)

Value

Tibble summarizing the sequence information for each repertoire_id randomly sampled to the minimum count