Uncount, sample and iteratively calculate repertoire summary statistics
Source:R/clonality.R
iterativeSummary.Rd
Uncount, sample and iteratively calculate repertoire summary statistics
Arguments
- study_table
A tibble consisting of antigen receptor sequencing imported by the LymphoSeq2 function
readImmunoSeq()
. "junction_aa", "duplicate_count", and "duplicate_frequency" are required columns. Note that clonality is usually calculated from productive junction sequences. Therefore, it is not recommended to run this function using a productive sequence list aggregated by amino acids.- iterations
Number of iterations to run the sampled clonality metrics.
- min_count
The minimum depth to which each repertoire in the study must be sampled to. Default 1000 (the default)